Epigenetic data & tools online
A brief list of Epigenetic tools available on line.
Histone and DNA post-translational modification databases*:
- NCBI Epigenomics Sample Browser - Currenlty this is the largest and most comprehensive collection (28.10.2010)
- HHMD - Human Histone Modification Database (data sources include ENCODE, Zhao lab and some others)
- Data from Zhao Lab (NIH) - Genome-wide mapping of histone H3 modifications in human CD4+ T cells:
H3 methylation, H2A.Z, CTCF & Pol II occupancies (Barski et al., 2007)
H3 actetylation (Wang et al., 2008)
- Data from Young Lab (MIT) - Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast (Pokholok et al., 2005)
- HistoneHits - phenotypes for systematic collections of histone mutants
- MethDB - the database for DNA methylation and environmental epigenetic effects
- EpiGRAPH - software for advanced (epi-) genome analysis and prediction
- CREMOFAC - A web-database of chromatin remodeling factors
CREMOFAC contains 64 types of remodeling factors from 49 different organisms reported in literature (26.10.2010)
- ChromatinDB - visualising histone modification data (last update in 2007?)
- Also have a look at the Wikipedia page
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